Mystic is a Matlab program (with supporting Python scripts) that runs a conceptual, quantitative
simulation of the biogeochemistry of Mystic Lake, a polluted, dimictic lake outside Boston.
The model was designed to predict the overall vertical spatial distribution of major
chemical species and microbial metabolisms in the lake.
Sarah P. Preheim, Scott W. Olesen, Sarah J. Spencer, Arne Materna,
Charuleka Varadharajan, Matthew Blackburn, Jonathan Friedman, Jorge
Rodrguez, Harold Hemond and Eric J. Alm. Surveys, simulation and
single-cell assays relate function and phylogeny in a lake ecosystem.
The source for the model run in the paper:
Mystic (zipped source)
Mystic (Alm Lab github page)